Stem-loop lja-MIR11068d

Accession

MI0035780

Description

Lotus japonicus lja-MIR11068d precursor miRNA

Sequence

16318 reads, 1085.0 reads per million, 9 experiments

ugucagcauaucuaauaguaAAGUUCUUAGUUCUUAGUUCUUAAcucuaaaauaaaAACUAAGAACCUUGCAUUGGAGAUgcucuaaca
....(((((.((((((.((((.((((((((((.(((................))).)))))))))).)))))))))).)))))......

Structure

--uguc     a      a    A          C   GUUCUUA 
      agcau ucuaau guaA GUUCUUAGUU UUA       A
      ||||| |||||| |||| |||||||||| |||        
      ucgUA AGGUUA CGUU CAAGAAUCAA aau       c
acaauc     G      -    C          a   aaaaucu 

Annotation confidence Low

Genome context

Chr5: 4953977-4954065 [+]

Mature lja-miR11068d-5p

• Accession: MIMAT0054639
• Description: Lotus japonicus lja-miR11068d-5p mature miRNA
• Sequence: 21 - AAGUUCUUAGUUCUUAGUUCUUAA - 44
• Evidence: experimental ; unknown

Mature lja-miR11068d-3p

• Accession: MIMAT0043754
• Description: Lotus japonicus lja-miR11068d-3p mature miRNA
• Sequence: 57 - AACUAAGAACCUUGCAUUGGAGAU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256