Stem-loop lja-MIR11068d

Accession

MI0035780

Description

Lotus japonicus lja-MIR11068d precursor miRNA

Sequence

ugucagcauaucuaauaguaaaguucuuaguucuuaguucuuaacucuaaaauaaaaacuaaGAACCUUGCAUUGGAGAUGCucuaaca
....(((((.((((((.((((.((((((((((.(((................))).)))))))))).)))))))))).)))))......

Structure

--uguc     a      a    a          c   guucuua 
      agcau ucuaau guaa guucuuaguu uua       a
      ||||| |||||| |||| |||||||||| |||        
      uCGUA AGGUUA CGUU CAAGaaucaa aau       c
acaauc     G      -    C          a   aaaaucu 

Annotation confidence Not enough data

Genome context

Chr5: 4953977-4954065 [+]

Mature lja-miR11068d-3p

• Accession: MIMAT0043754
• Description: Lotus japonicus lja-miR11068d-3p mature miRNA
• Sequence: 63 - GAACCUUGCAUUGGAGAUGC - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256