Stem-loop lja-MIR11072i

Accession

MI0035781

Description

Lotus japonicus lja-MIR11072i precursor miRNA

Sequence

uugccaaaucagcgcucgccggagcucugaACUCUGGCGAGGAUCCGCUCCAaauaauuuucaaacaugaggacaauuuacaaugaauuuuucgggGAGGGACCUAGAUCAGACGGcga
(((((...((((.((((....)))).))))..((((((.(((.(((.((((....((..((((....((((.....))))...))))..))....)))))))))).).))))).)))))

Structure

     aaaucagcgcucgccggagcucugaAC     - G   A   G    Aaau  uu    aaca    g 
uugcc                           UCUGG C AGG UCC CUCC    aa  uuca    ugag a
|||||                           ||||| | ||| ||| ||||    ||  ||||    |||| c
agcGG                           AGACU G UCC AGG GAGg    uu  aagu    auuu a
     --------------------------C     A A   -   -    ggcu  uu    -aac    a 

Annotation confidence Not enough data

Genome context

Chr1: 39543029-39543147 [+]

Mature lja-miR11072i-5p

• Accession: MIMAT0043755
• Description: Lotus japonicus lja-miR11072i-5p mature miRNA
• Sequence: 31 - ACUCUGGCGAGGAUCCGCUCCA - 52
• Evidence: experimental ; Illumina [1]

Mature lja-miR11072i-3p

• Accession: MIMAT0043756
• Description: Lotus japonicus lja-miR11072i-3p mature miRNA
• Sequence: 97 - GAGGGACCUAGAUCAGACGG - 116
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256