Stem-loop lja-MIR7526i

Accession

MI0035783

Description

Lotus japonicus lja-MIR7526i precursor miRNA

Sequence

2317 reads, 199.0 reads per million, 9 experiments

cuuccgcaaucaagauagcgguaacuaccgcagucaagauagcgguaacuuccgcUAUCAAGAUAGCUGUAACUuccgcuaucaagauagcuguaacuguuaucuuaauAGCGGAAGUUACAGCUACCUUGAUagcggacguuacagcuauuuuaauugcgguaguuaccgcuacuaagauagcgguag
((.((((.(((.((.(((((((((((((((((((.((((((((.(((((.((((((((((((.(((((((((((((((((((.((((((((.......)))))))).))))))))))))))))))).)))))))))))).))))).)))))))).)))))))))))))))))))))..))).)))).))

Structure

  u    a   -a  a                   c        g     u            A                   c        ug 
cu ccgc auc  ag uagcgguaacuaccgcagu aagauagc guaac uccgcUAUCAAG UAGCUGUAACUuccgcuau aagauagc  u
|| |||| |||  || ||||||||||||||||||| |||||||| ||||| |||||||||||| ||||||||||||||||||| ||||||||  a
ga ggcg uag  uc aucgccauugauggcguua uuuuaucg cauug aggcgaUAGUUC AUCGACAUUGAAGGCGAua uucuauug  a
  u    a   aa  -                   a        a     c            C                   a        uc 

Annotation confidence Low

Genome context

Chr1: 5373712-5373900 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR7526i

Mature lja-miR7526i-5p

• Accession: MIMAT0054640
• Description: Lotus japonicus lja-miR7526i-5p mature miRNA
• Sequence: 56 - UAUCAAGAUAGCUGUAACU - 74
• Evidence: experimental ; unknown

Mature lja-miR7526i-3p

• Accession: MIMAT0043759
• Description: Lotus japonicus lja-miR7526i-3p mature miRNA
• Sequence: 110 - AGCGGAAGUUACAGCUACCUUGAU - 133
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256