Stem-loop lja-MIR11085

Accession

MI0035787

Description

Lotus japonicus lja-MIR11085 precursor miRNA

Sequence

1019 reads, 148.0 reads per million, 9 experiments

caaguugcuuaguuguaUCAAAUAUGAAGAUGCAAUAACcuaaauugugaaauauuagcuuaUUGCAUUUCAUCUUUGAUACauucuugcauacuug
((((((((.....(((((((((.((((.((((((((((.(((((((....))).)))).)))))))))))))).))))))))).....))).)))))

Structure

     -   uuagu         U    A          C    -   g 
caagu ugc     uguaUCAAA AUGA GAUGCAAUAA cuaa auu u
||||| |||     ||||||||| |||| |||||||||| |||| |||  
guuca acg     aCAUAGUUU UACU UUACGUUauu gauu uaa g
     u   uucuu         C    -          c    a   a 

Annotation confidence High

Genome context

Chr1: 28657082-28657178 [-]

Mature lja-miR11085-5p

• Accession: MIMAT0043763
• Description: Lotus japonicus lja-miR11085-5p mature miRNA
• Sequence: 18 - UCAAAUAUGAAGAUGCAAUAAC - 39
• Evidence: experimental ; Illumina [1]

Mature lja-miR11085-3p

• Accession: MIMAT0043764
• Description: Lotus japonicus lja-miR11085-3p mature miRNA
• Sequence: 63 - UUGCAUUUCAUCUUUGAUAC - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256