Stem-loop lja-MIR11097c

Accession

MI0035789

Description

Lotus japonicus lja-MIR11097c precursor miRNA

Sequence

6948 reads, 1093.0 reads per million, 9 experiments

aAGAGUUUAAUUUUGAUGCACCGACAauguaaaguuuuuuuacacugucaaucaaccaaauuucaaauauuuguuaugucgcucaauuuaauuaaauaaaaaauuugucguucacacauucaagaaaucugauugguugacaguguaaAAAAAACUUUACACCGUCGGUGCAucaaacuuuuuucucuu
(((((...((.((((((((((((((..((((((((((((((((((((((((((((.((.(((((....((.(((.(((.((.....((((......)))).....)).)))..))).))....))))).)).)))))))))))))).))))))))))))))..)))))))))))))).))....)))))

Structure

     -UUU  U              Aa              -              c  a     aaau  u   -u   u  cucaa    au 
aAGAG    AA UUUGAUGCACCGAC  uguaaaguuuuuuu acacugucaaucaa ca auuuc    au ugu  aug cg     uuua  u
|||||    || ||||||||||||||  |||||||||||||| |||||||||||||| || |||||    || |||  ||| ||     ||||   
uucuc    uu aaacuACGUGGCUG  ACAUUUCAAAAAAa ugugacaguugguu gu uaaag    ua aca  ugc gu     aaau  a
     uuuu  c              CC              a              a  c     aacu  c   cu   u  uuaaa    aa 

Annotation confidence Low

Genome context

Chr1: 28898184-28898372 [+]

Mature lja-miR11097c-5p

• Accession: MIMAT0054643
• Description: Lotus japonicus lja-miR11097c-5p mature miRNA
• Sequence: 2 - AGAGUUUAAUUUUGAUGCACCGACA - 26
• Evidence: experimental ; unknown

Mature lja-miR11097c-3p

• Accession: MIMAT0043767
• Description: Lotus japonicus lja-miR11097c-3p mature miRNA
• Sequence: 149 - AAAAAACUUUACACCGUCGGUGCA - 172
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256