Stem-loop lja-MIR11087

Accession

MI0035790

Description

Lotus japonicus lja-MIR11087 precursor miRNA

Sequence

1135 reads, 159.0 reads per million, 9 experiments

uagccuguauggguuugguugaaacggguuggguuguguuAACCCGGGGUCUUAACGAGucaagaaaauaugaacccaacccggcUCGCUACGAGCUCGCGGGcug
((((((((..(((((((..(((..((((((((((((((((......((.((.....)).)).....))))).)))))))))))..)))...)))))))))))))))

Structure

        au       -gu   aa           -     AACCCG  G  U 
uagccugu  ggguuug   uga  cggguuggguu guguu      GG UC U
||||||||  |||||||   |||  ||||||||||| |||||      || || A
gucGGGCG  CUCGAGC   GCU  gcccaacccaa uauaa      cu AG A
        --       AUC   cg           g     -aagaa  G  C 

Annotation confidence Low

Genome context

Chr2: 22111364-22111469 [-]

Mature lja-miR11087-5p

• Accession: MIMAT0054644
• Description: Lotus japonicus lja-miR11087-5p mature miRNA
• Sequence: 41 - AACCCGGGGUCUUAACGAG - 59
• Evidence: experimental ; unknown

Mature lja-miR11087-3p

• Accession: MIMAT0043768
• Description: Lotus japonicus lja-miR11087-3p mature miRNA
• Sequence: 86 - UCGCUACGAGCUCGCGGG - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256