Stem-loop lja-MIR11088a

Accession

MI0035791

Description

Lotus japonicus lja-MIR11088a precursor miRNA

Sequence

730 reads, 99.0 reads per million, 8 experiments

cccgccgaAAUGCGGGUUGGGUUGGGCUagcccacauuugguauuuugguucaaagucUCAACCCAACCCAUAUUUUGgcggg
((((((((((((.(((((((((((((((((((...............))))...)))).))))))))))).))))))))))))

Structure

            C           -    ---    cacauu 
cccgccgaAAUG GGGUUGGGUUG GGCU   agcc      u
|||||||||||| ||||||||||| ||||   ||||      g
gggcgGUUUUAU CCCAACCCAAC cuga   uugg      g
            A           U    aac    uuuuau 

Annotation confidence Medium

Genome context

Chr4: 28947874-28947956 [-]

Mature lja-miR11088a-5p

• Accession: MIMAT0043769
• Description: Lotus japonicus lja-miR11088a-5p mature miRNA
• Sequence: 9 - AAUGCGGGUUGGGUUGGGCU - 28
• Evidence: experimental ; Illumina [1]

Mature lja-miR11088a-3p

• Accession: MIMAT0043770
• Description: Lotus japonicus lja-miR11088a-3p mature miRNA
• Sequence: 59 - UCAACCCAACCCAUAUUUUG - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256