Stem-loop lja-MIR11089a

Accession

MI0035792

Description

Lotus japonicus lja-MIR11089a precursor miRNA

Sequence

458 reads, 54.0 reads per million, 9 experiments

aaccaaagaaccaugaUUUUAGAGGGACCUAAGACAUGAUaaauauggauuuUUAGGUCCCUCUAAAAUCAUGgcuccuugguu
((((((.((.((((((((((((((((((((((((((((.....))))...)))))))))))))))))))))))).)).))))))

Structure

      a  a                        ---    A 
aaccaa ga ccaugaUUUUAGAGGGACCUAAGA   CAUG U
|||||| || ||||||||||||||||||||||||   |||| a
uugguu cu gGUACUAAAAUCUCCCUGGAUUuu   guau a
      c  c                        uag    a 

Annotation confidence Low

Genome context

Chr1: 54344136-54344219 [+]

Mature lja-miR11089a-5p

• Accession: MIMAT0043771
• Description: Lotus japonicus lja-miR11089a-5p mature miRNA
• Sequence: 17 - UUUUAGAGGGACCUAAGACAUGAU - 40
• Evidence: experimental ; Illumina [1]

Mature lja-miR11089a-3p

• Accession: MIMAT0054645
• Description: Lotus japonicus lja-miR11089a-3p mature miRNA
• Sequence: 53 - UUAGGUCCCUCUAAAAUCAUG - 73
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256