Stem-loop lja-MIR11068e

Accession

MI0035793

Description

Lotus japonicus lja-MIR11068e precursor miRNA

Sequence

1521 reads, 206.0 reads per million, 9 experiments

agcaccuccaauguaAAGUUCUUAGUUCUUAGUUuuuaacucaaaaauaaaAACUAAGAACCUUGCAUUGAAGAUgcu
((((.((.((((((((.((((((((((.(((.(((((.....)))))))).)))))))))).)))))))).)).))))

Structure

    c  c        A          C   G     a 
agca cu caauguaA GUUCUUAGUU UUA UUuuu a
|||| || |||||||| |||||||||| ||| ||||| c
ucgU GA GUUACGUU CAAGAAUCAA aau aaaaa u
    A  A        C          a   -     c 

Annotation confidence Low

Genome context

Chr3: 2145317-2145394 [-]

Mature lja-miR11068e-5p

• Accession: MIMAT0054646
• Description: Lotus japonicus lja-miR11068e-5p mature miRNA
• Sequence: 16 - AAGUUCUUAGUUCUUAGUU - 34
• Evidence: experimental ; unknown

Mature lja-miR11068e-3p

• Accession: MIMAT0043772
• Description: Lotus japonicus lja-miR11068e-3p mature miRNA
• Sequence: 52 - AACUAAGAACCUUGCAUUGAAGAU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256