Stem-loop lja-MIR11108c

Accession

MI0035794

Description

Lotus japonicus lja-MIR11108c precursor miRNA

Sequence

8498 reads, 1314.0 reads per million, 9 experiments

acccaugauaaaguuuuaguuaaauaacucauuauccgaucacauuggagauaaaUGAGUUGGAAAUAAAUUAAUAAAUaaaauauagaaauuccaacucauuuaucucuaaugUGAUUGGAUGAUGGGUUAUUUaacccaaacuuuaucaugggu
((((((((((((((((..(((((((((((((((((((((((((((((((((((((((((((((((..........................)))))))))))))))))))))))))))))))))))))))))))))))..))))))))))))))))

Structure

                ua                                               AUAAAUUAAUAA 
acccaugauaaaguuu  guuaaauaacucauuauccgaucacauuggagauaaaUGAGUUGGAA            A
||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||             
uggguacuauuucaaa  caaUUUAUUGGGUAGUAGGUUAGUguaaucucuauuuacucaaccuu            U
                cc                                               aaagauauaaaa 

Annotation confidence Low

Genome context

Chr1: 35493937-35494092 [+]

Mature lja-miR11108c-5p

• Accession: MIMAT0054647
• Description: Lotus japonicus lja-miR11108c-5p mature miRNA
• Sequence: 56 - UGAGUUGGAAAUAAAUUAAUAAAU - 79
• Evidence: experimental ; unknown

Mature lja-miR11108c-3p

• Accession: MIMAT0043773
• Description: Lotus japonicus lja-miR11108c-3p mature miRNA
• Sequence: 115 - UGAUUGGAUGAUGGGUUAUUU - 135
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256