Stem-loop lja-MIR11090a

Accession

MI0035795

Description

Lotus japonicus lja-MIR11090a precursor miRNA

Sequence

6410 reads, 919.0 reads per million, 9 experiments

uaugggugaggAGAAGACUUUAUAAGAGAUGUGACucauaaacuuaaugccuuaagguuuugaguuaacaugugauguugaUAUCUCUUGGUGUCUUGCUCcucgacccaug
((((((((((((((((((....(((((((((((((((((((((((((.(((....))).)))))))....))))).))).))))))))))..))))).)))))).)))))))

Structure

       -      -     UUUA          -   -     ----       u   u 
uaugggu gaggAG AAGAC    UAAGAGAUGU GAC ucaua    aacuuaa gcc u
||||||| |||||| |||||    |||||||||| ||| |||||    ||||||| |||  
guaccca cucCUC UUCUG    GUUCUCUAUa uug agugu    uugaguu ugg a
       g      G     --UG          g   u     acaa       u   a 

Annotation confidence Low

Genome context

Chr0: 22753947-22754058 [+]

Mature lja-miR11090a-5p

• Accession: MIMAT0043774
• Description: Lotus japonicus lja-miR11090a-5p mature miRNA
• Sequence: 12 - AGAAGACUUUAUAAGAGAUGUGAC - 35
• Evidence: experimental ; Illumina [1]

Mature lja-miR11090a-3p

• Accession: MIMAT0054648
• Description: Lotus japonicus lja-miR11090a-3p mature miRNA
• Sequence: 82 - UAUCUCUUGGUGUCUUGCUC - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256