Stem-loop lja-MIR11090b

Accession

MI0035796

Description

Lotus japonicus lja-MIR11090b precursor miRNA

Sequence

ugaggagaagACUUUAUAAGAGAUGUGACUCauaaaccuaaugccuuaagauuuuggguuaagaugugacguuaauaucucuugauguuuugcuccucg
.(((((((((((....(((((((((((((((((((((((((............)))))))....))))).))).))))))))))..))))).)))))).

Structure

u      -     UUUA          -   -     ----       ugccu 
 gaggag aagAC    UAAGAGAUGU GAC UCaua    aaccuaa     u
 |||||| |||||    |||||||||| ||| |||||    |||||||      
 cuccuc uuuug    guucucuaua uug agugu    uuggguu     a
g      g     --ua          a   c     agaa       uuaga 

Annotation confidence Not enough data

Genome context

Chr2: 32905721-32905819 [-]

Mature lja-miR11090b-5p

• Accession: MIMAT0043775
• Description: Lotus japonicus lja-miR11090b-5p mature miRNA
• Sequence: 11 - ACUUUAUAAGAGAUGUGACUC - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256