miRBase entry: lja-MIR11090b

Stem-loop lja-MIR11090b


Accession
MI0035796
Description
Lotus japonicus lja-MIR11090b precursor miRNA


Sequence

6377 reads, 919.0 reads per million, 9 experiments
ugaggAGAAGACUUUAUAAGAGAUGUGACucauaaaccuaaugccuuaagauuUUGGGUUAAGAUGUGACGUuaauaucucuugauguuuugcuccucg
.(((((((((((....(((((((((((((((((((((((((............)))))))....))))).))).))))))))))..))))).)))))).

Structure
u      -     UUUA          -   -     ----       ugccu 
 gaggAG AAGAC    UAAGAGAUGU GAC ucaua    aaccuaa     u
 |||||| |||||    |||||||||| ||| |||||    |||||||      
 cuccuc uuuug    guucucuaua uUG AGUGU    UUGGGUU     a
g      g     --ua          a   C     AGAA       uuaga 


Annotation confidence Low
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Genome context
Chr2: 32905721-32905819 [-]

Database links

Mature lja-miR11090b-5p

Accession MIMAT0043775
Description Lotus japonicus lja-miR11090b-5p mature miRNA
Sequence 6 - AGAAGACUUUAUAAGAGAUGUGAC - 29
Evidence experimental
Illumina [1]

Mature lja-miR11090b-3p

Accession MIMAT0054649
Description Lotus japonicus lja-miR11090b-3p mature miRNA
Sequence 54 - UUGGGUUAAGAUGUGACGU - 72
Evidence experimental
unknown

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256