Stem-loop lja-MIR11090c

Accession

MI0035797

Description

Lotus japonicus lja-MIR11090c precursor miRNA

Sequence

14576 reads, 1399.0 reads per million, 9 experiments

gaggAGAAGACUUUAUAAGAGAUGUGACucauaaaccuaaugccauaagguuuuggguuaagaUGUGGCGUCGAUAUCUCUUagcgucuugcuccuc
(((((((((((....(((((((((((((((((((((((((.(((....))).)))))))....))))).))).))))))))))..))))).))))))

Structure

      -     UUUA          -   -     ----       u   a 
gaggAG AAGAC    UAAGAGAUGU GAC ucaua    aaccuaa gcc u
|||||| |||||    |||||||||| ||| |||||    ||||||| |||  
cuccuc uucug    aUUCUCUAUA CUG GGUGU    uuggguu ugg a
      g     --cg          G   C     agaa       u   a 

Annotation confidence Low

Genome context

Chr4: 11241834-11241930 [+]

Mature lja-miR11090c-5p

• Accession: MIMAT0043776
• Description: Lotus japonicus lja-miR11090c-5p mature miRNA
• Sequence: 5 - AGAAGACUUUAUAAGAGAUGUGAC - 28
• Evidence: experimental ; Illumina [1]

Mature lja-miR11090c-3p

• Accession: MIMAT0054650
• Description: Lotus japonicus lja-miR11090c-3p mature miRNA
• Sequence: 64 - UGUGGCGUCGAUAUCUCUU - 82
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256