Stem-loop lja-MIR11090d

Accession

MI0035798

Description

Lotus japonicus lja-MIR11090d precursor miRNA

Sequence

13753 reads, 1259.0 reads per million, 9 experiments

gAGAAGACUUUAUAAGAGAUGUGACucauaaaccuaacgccuuaaaguuuuggguuaagaUGUGGCGUCGAUAUCUCUUaguguuuuacuc
((((((((....(((((((((((((((((((((((((.((......)).)))))))....))))).))).))))))))))..))))).)))

Structure

   -     UUUA          -   -     ----       c  cu 
gAG AAGAC    UAAGAGAUGU GAC ucaua    aaccuaa gc  u
||| |||||    |||||||||| ||| |||||    ||||||| ||   
cuc uuuug    aUUCUCUAUA CUG GGUGU    uuggguu ug  a
   a     --ug          G   C     agaa       u  aa 

Annotation confidence Low

Genome context

Chr4: 13549809-13549899 [+]

Mature lja-miR11090d-5p

• Accession: MIMAT0043777
• Description: Lotus japonicus lja-miR11090d-5p mature miRNA
• Sequence: 2 - AGAAGACUUUAUAAGAGAUGUGAC - 25
• Evidence: experimental ; Illumina [1]

Mature lja-miR11090d-3p

• Accession: MIMAT0043778
• Description: Lotus japonicus lja-miR11090d-3p mature miRNA
• Sequence: 61 - UGUGGCGUCGAUAUCUCUU - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256