Stem-loop lja-MIR11093

Accession

MI0035801

Description

Lotus japonicus lja-MIR11093 precursor miRNA

Sequence

4959 reads, 623.0 reads per million, 9 experiments

guuuuaaucuaaaccguuuaugaUUAGAUCUAAAGGUCGUGAUUuauucucaugaucucacauaaaaacacauuucucauaagauguaucucaagagaaagguaacuuuaugugagaaaauaagaauAAAUCACGACCGUUAGAUCUgaucaugaacgguucagauuaagac
((((((((((.((((((((((((((((((((((.((((((((((((((((.((..(((((((((((...((.((((((...(((....)))...)))))).))...)))))))))))..)).)))))))))))))))).)))))))))))))))))))))).))))))))))

Structure

          a                      A                c  ga           aac  a      aua   u 
guuuuaaucu aaccguuuaugaUUAGAUCUAA GGUCGUGAUUuauucu au  ucucacauaaa   ac uuucuc   aga g
|||||||||| |||||||||||||||||||||| |||||||||||||||| ||  |||||||||||   || ||||||   |||  
cagaauuaga uuggcaaguacuagUCUAGAUU CCAGCACUAAAuaaga ua  agaguguauuu   ug aaagag   ucu u
          c                      G                a  aa           caa  g      aac   a 

Annotation confidence Low

Genome context

Chr4: 22962214-22962385 [+]

Mature lja-miR11093-5p

• Accession: MIMAT0054651
• Description: Lotus japonicus lja-miR11093-5p mature miRNA
• Sequence: 24 - UUAGAUCUAAAGGUCGUGAUU - 44
• Evidence: experimental ; unknown

Mature lja-miR11093-3p

• Accession: MIMAT0043781
• Description: Lotus japonicus lja-miR11093-3p mature miRNA
• Sequence: 128 - AAAUCACGACCGUUAGAUCU - 147
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256