Stem-loop lja-MIR11095

Accession

MI0035804

Description

Lotus japonicus lja-MIR11095 precursor miRNA

Sequence

gcuaaguccauguauguaaguccuUCUAUAAUUGAUUCUGAAGCCaaaaucaauuuuggggagaagcuucuuugaauagcuuacgggugccagaauugauuaugaAUUCAGAAUCAAUUGUAGUAGggguuccagacaugcacuaagu
(((.(((.(((((.((.((.((((.(((((((((((((((((..((.((((((((((((.(..(((((.........))))).....).)))))))))))).))..))))))))))))))))).)))).)).)).))))).))).)))

Structure

   a   c     a  u  g    U                 GC  a            g ---ag     ucu 
gcu agu caugu ug aa uccu CUAUAAUUGAUUCUGAA  Ca aaucaauuuugg g     aagcu   u
||| ||| ||||| || || |||| |||||||||||||||||  || |||||||||||| |     |||||   u
uga uca guaca ac uu ggGA GAUGUUAACUAAGACUU  gu uuaguuaagacc u     uucga   g
   a   c     g  c  g    U                 Aa  a            g gggca     uaa 

Annotation confidence Not enough data

Genome context

Chr1: 22830114-22830261 [-]

Mature lja-miR11095-5p

• Accession: MIMAT0043784
• Description: Lotus japonicus lja-miR11095-5p mature miRNA
• Sequence: 25 - UCUAUAAUUGAUUCUGAAGCC - 45
• Evidence: experimental ; Illumina [1]

Mature lja-miR11095-3p

• Accession: MIMAT0043785
• Description: Lotus japonicus lja-miR11095-3p mature miRNA
• Sequence: 106 - AUUCAGAAUCAAUUGUAGUAG - 126
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256