Stem-loop lja-MIR11097a

Accession

MI0035807

Description

Lotus japonicus lja-MIR11097a precursor miRNA

Sequence

2381 reads, 270.0 reads per million, 9 experiments

gaguUUAAUUUUGAUGCACCGACGGUGUGaaguuuuuuuacaccgUCGGUGCAUCAAACUUUUUCUc
(((...((.((((((((((((((((((((((.....)))))))))))))))))))))).))...)))

Structure

   uUU  U                      g 
gag   AA UUUGAUGCACCGACGGUGUGaa u
|||   || |||||||||||||||||||||| u
cUC   UU AAACUACGUGGCUgccacauuu u
   UUU  C                      u 

Annotation confidence Medium

Genome context

Chr0: 13031234-13031300 [+]

Mature lja-miR11097a-5p

• Accession: MIMAT0043788
• Description: Lotus japonicus lja-miR11097a-5p mature miRNA
• Sequence: 5 - UUAAUUUUGAUGCACCGACGGUGUG - 29
• Evidence: experimental ; Illumina [1]

Mature lja-miR11097a-3p

• Accession: MIMAT0043789
• Description: Lotus japonicus lja-miR11097a-3p mature miRNA
• Sequence: 46 - UCGGUGCAUCAAACUUUUUCU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256