Stem-loop lja-MIR11108e

Accession

MI0035808

Description

Lotus japonicus lja-MIR11108e precursor miRNA

Sequence

8076 reads, 1242.0 reads per million, 9 experiments

uaaguaacccaucauccaaucacauuggagauaaaUGAGUUGGAAAUAAAUUAAUAAAUaaaauauagaaauuccaacucacuuaucuccaaugUGAUUGGAUGAUGGGUUAUUUa
((((((((((((((((((((((((((((((((((.((((((((((..........................)))))))))).))))))))))))))))))))))))))))))))))

Structure

                                  a          AUAAAUUAAUAA 
uaaguaacccaucauccaaucacauuggagauaa UGAGUUGGAA            A
|||||||||||||||||||||||||||||||||| ||||||||||             
aUUUAUUGGGUAGUAGGUUAGUguaaccucuauu acucaaccuu            U
                                  c          aaagauauaaaa 

Annotation confidence Low

Genome context

Chr4: 26406276-26406391 [+]

Mature lja-miR11108e-5p

• Accession: MIMAT0043790
• Description: Lotus japonicus lja-miR11108e-5p mature miRNA
• Sequence: 36 - UGAGUUGGAAAUAAAUUAAUAAAU - 59
• Evidence: experimental ; Illumina [1]

Mature lja-miR11108e-3p

• Accession: MIMAT0043791
• Description: Lotus japonicus lja-miR11108e-3p mature miRNA
• Sequence: 95 - UGAUUGGAUGAUGGGUUAUUU - 115
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256