Stem-loop lja-MIR11099

Accession

MI0035810

Description

Lotus japonicus lja-MIR11099 precursor miRNA

Sequence

uuCAUAGGACCUGCAUAGAAGCCaguaauccauuuaacggugugcuaauugcauuaguggcuucuaugcgagucauaugaa
.(((((.(((.(((((((((((((.((((.((.(((.(.....).))).)).)))).))))))))))))).))).))))).

Structure

u     G   C             g    c  u   a g 
 uCAUA GAC UGCAUAGAAGCCa uaau ca uua c g
 ||||| ||| ||||||||||||| |||| || ||| | u
 aguau cug gcguaucuucggu auua gu aau g g
a     a   a             g    c  u   c u 

Annotation confidence Not enough data

Genome context

Chr1: 46808731-46808811 [-]

Mature lja-miR11099-5p

• Accession: MIMAT0043793
• Description: Lotus japonicus lja-miR11099-5p mature miRNA
• Sequence: 3 - CAUAGGACCUGCAUAGAAGCC - 23
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256