Stem-loop lja-MIR11077b

Accession

MI0035814

Description

Lotus japonicus lja-MIR11077b precursor miRNA

Sequence

1986 reads, 308.0 reads per million, 9 experiments

acccauagacUUUGUUUGGUUGGGUGGAAggaaagugggaagaaaagaaaacacggaaaccgauggaugaauuaagacuacaccuuagucuuaauucacuccUCGGUUUCCGUGUUUUCUUUCCUUcucaguuuccuuccacccaaccaaacauagucauagggug
((((...((((.((((((((((((((((((((((.(((((((.((((((((((((((((((((.((((((((((((((((.....))))))))))))).))))))))))))))))))))))).))))))).)))))))))))))))))))))).))))...)))).

Structure

-    aua    U                      g       a                    u   -             c 
 accc   gacU UGUUUGGUUGGGUGGAAggaaa ugggaag aaagaaaacacggaaaccga gga ugaauuaagacua a
 ||||   |||| |||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||||||||||| c
 uggg   cuga acaaaccaacccaccuuccuuu acucUUC UUUCUUUUGUGCCUUUGGCU ccu acuuaauucugau c
g    aua    u                      g       C                    -   c             u 

Annotation confidence Low

Genome context

Unknown

Mature lja-miR11077b-5p

• Accession: MIMAT0043798
• Description: Lotus japonicus lja-miR11077b-5p mature miRNA
• Sequence: 11 - UUUGUUUGGUUGGGUGGAA - 29
• Evidence: experimental ; Illumina [1]

Mature lja-miR11077b-3p

• Accession: MIMAT0054656
• Description: Lotus japonicus lja-miR11077b-3p mature miRNA
• Sequence: 103 - UCGGUUUCCGUGUUUUCUUUCCUU - 126
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256