Stem-loop lja-MIR11102

Accession

MI0035815

Description

Lotus japonicus lja-MIR11102 precursor miRNA

Sequence

7853 reads, 577.0 reads per million, 9 experiments

accauccuuUUGUCAAUCUUUCGUAGCCUUCaucaaauucauauggaaccuuguuaguccuccuagcaagaucuucacauugauagauccuacugggggcacuaacaagauucuauaugaauuUGAUGAAGGCUACGGAAGAUUGauaaaaugauggu
((((((.(((((((((((((((((((((((((((((((((((((((((.(((((((((.(((((((...((((((((...))).)))))...))))))).))))))))).))))))))))))))))))))))))))))))))))))))))).))))))

Structure

      c                                         c         c       caa     -   c 
accauc uuUUGUCAAUCUUUCGUAGCCUUCaucaaauucauauggaa cuuguuagu cuccuag   gaucu uca  
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||   ||||| ||| a
ugguag aaaauaGUUAGAAGGCAUCGGAAGUAGUuuaaguauaucuu gaacaauca ggggguc   cuaga agu  
      u                                         a         c       auc     u   u 

Annotation confidence Low

Genome context

Chr1: 42057100-42057257 [-]

Mature lja-miR11102-5p

• Accession: MIMAT0054657
• Description: Lotus japonicus lja-miR11102-5p mature miRNA
• Sequence: 10 - UUGUCAAUCUUUCGUAGCCUUC - 31
• Evidence: experimental ; unknown

Mature lja-miR11102-3p

• Accession: MIMAT0043799
• Description: Lotus japonicus lja-miR11102-3p mature miRNA
• Sequence: 124 - UGAUGAAGGCUACGGAAGAUUG - 145
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256