Stem-loop lja-MIR11103a

Accession

MI0035816

Description

Lotus japonicus lja-MIR11103a precursor miRNA

Sequence

5028 reads, 564.0 reads per million, 9 experiments

ggauccucuccggugaaauucucucaauUUUUCUCCAGUGGACAUUUGUggcgguuuugaaccgccacaaaauuuuuccagcugccacaaaauacugcugaaaaaaauugacagacuuuguggcagcuggaaacauuuuguggcgguccaaaaccgccacaaAUGUCCACUGGAGAAAACUUGAGAggauuucacuggagaggaucc
(((((((((((((((((((((((((((.(((((((((((((((((((((((((((((((.(((((((((((((.(((((((((((((((((.(.((((...........).)))).))))))))))))))))).))))))))))))).))))))))))))))))))))))))))))))).)))))))))))))))))))))))))))

Structure

                           u                               a             u                 a a   - ugaa 
ggauccucuccggugaaauucucucaa UUUUCUCCAGUGGACAUUUGUggcgguuuug accgccacaaaau uuuccagcugccacaaa u cug c    a
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| | ||| |    a
ccuaggagaggucacuuuaggAGAGUU AAAAGAGGUCACCUGUAaacaccgccaaaac uggcgguguuuua aaaggucgacgguguuu a gac g    a
                           C                               c             c                 c -   a uuaa 

Annotation confidence Low

Genome context

Chr3: 17464833-17465039 [-]

Mature lja-miR11103a-5p

• Accession: MIMAT0054658
• Description: Lotus japonicus lja-miR11103a-5p mature miRNA
• Sequence: 29 - UUUUCUCCAGUGGACAUUUGU - 49
• Evidence: experimental ; unknown

Mature lja-miR11103a-3p

• Accession: MIMAT0043800
• Description: Lotus japonicus lja-miR11103a-3p mature miRNA
• Sequence: 163 - AUGUCCACUGGAGAAAACUUGAGA - 186
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256