Stem-loop lja-MIR7533d

Accession

MI0035817

Description

Lotus japonicus lja-MIR7533d precursor miRNA

Sequence

ucggauuuggaucuuuuccauccaacuucucuccauccaaaucugagacauugauuuugaaauuuaaagacuuggaucaauuuaagaagugagaaaaaaaugaauuguauuuaaagacuuggaucaauuuaagaagagaaagaaaauaugaauuaauccuuaccuuuaaaauucaaaaucaauggcucagauuuuggauggagaggaaauggagaGAAGCUGGAUGGAGAGGAUCCaaaucuga
((((((((((((((((((((((((.((((((((((((((((((((((.(((((((((((((.(((((((....((((.(((((((...............(((((((.((((((....)))))))))))))...............).)))))).))))....))))))).))))))))))))).)))))).))))))...........)))))))))).))))))))))))))))))))))))

Structure

                        a          -----------      -      a             a       acuu    c      - gaagugagaaaaaaa       u      a 
ucggauuuggaucuuuuccaucca cuucucucca           uccaaa ucugag cauugauuuugaa uuuaaag    ggau aauuua a               ugaauug auuuaa g
|||||||||||||||||||||||| ||||||||||           |||||| |||||| ||||||||||||| |||||||    |||| |||||| |               ||||||| ||||||  
agucuaaaCCUAGGAGAGGUAGGU GAAGagaggu           agguuu agacuc guaacuaaaacuu aaauuuc    ccua uuaagu u               auuuaac uagguu a
                        C          aaaggagaggu      u      g             a       cauu    a      a aaaagaaagagaaga       -      c 

Annotation confidence Not enough data

Genome context

Chr4: 26266520-26266763 [-]

Mature lja-miR7533d-3p

• Accession: MIMAT0043801
• Description: Lotus japonicus lja-miR7533d-3p mature miRNA
• Sequence: 216 - GAAGCUGGAUGGAGAGGAUCC - 236
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256