Stem-loop lja-MIR11077c

Accession

MI0035818

Description

Lotus japonicus lja-MIR11077c precursor miRNA

Sequence

2854 reads, 496.0 reads per million, 9 experiments

aggaaaggaaaggaaaggaaaacaCGGAAAUCGAGGAGUGAACUUggacuauuccAAGUUCACUCCUCGAUUUCCGUGUuuuccuuuccuuuccuuuccu
((((((((((((((((((((((((((((((((((((((((((((((((....))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                c 
aggaaaggaaaggaaaggaaaacaCGGAAAUCGAGGAGUGAACUUgga u
||||||||||||||||||||||||||||||||||||||||||||||||  
uccuuuccuuuccuuuccuuuUGUGCCUUUAGCUCCUCACUUGAAccu a
                                                u 

Annotation confidence Low

Genome context

Chr1: 35022735-35022834 [+]

Mature lja-miR11077c-5p

• Accession: MIMAT0043802
• Description: Lotus japonicus lja-miR11077c-5p mature miRNA
• Sequence: 25 - CGGAAAUCGAGGAGUGAACUU - 45
• Evidence: experimental ; Illumina [1]

Mature lja-miR11077c-3p

• Accession: MIMAT0054660
• Description: Lotus japonicus lja-miR11077c-3p mature miRNA
• Sequence: 56 - AAGUUCACUCCUCGAUUUCCGUGU - 79
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256