Stem-loop lja-MIR11077d

Accession

MI0035819

Description

Lotus japonicus lja-MIR11077d precursor miRNA

Sequence

3670 reads, 600.0 reads per million, 9 experiments

gAAAGGGAAAGAAAACACGGAAaucgaggagugaacuuggauuaaaccuuagucuaaauucacuccucaAUUUCCGUGUUUUCCUUCCUUuuc
(((((((((.((((((((((((((.((((((((((.(((((((((...))))))))).)))))))))).)))))))))))))).)))))))))

Structure

         A              c          c         a 
gAAAGGGAA GAAAACACGGAAau gaggagugaa uuggauuaa  
||||||||| |||||||||||||| |||||||||| ||||||||| c
cuuUUCCUU CUUUUGUGCCUUUA cuccucacuu aaucugauu  
         C              a          a         c 

Annotation confidence Low

Genome context

Chr4: 25227588-25227680 [-]

Mature lja-miR11077d-5p

• Accession: MIMAT0043803
• Description: Lotus japonicus lja-miR11077d-5p mature miRNA
• Sequence: 2 - AAAGGGAAAGAAAACACGGAA - 22
• Evidence: experimental ; Illumina [1]

Mature lja-miR11077d-3p

• Accession: MIMAT0043804
• Description: Lotus japonicus lja-miR11077d-3p mature miRNA
• Sequence: 70 - AUUUCCGUGUUUUCCUUCCUU - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256