Stem-loop lja-MIR11104

Accession

MI0035820

Description

Lotus japonicus lja-MIR11104 precursor miRNA

Sequence

500 reads, 77.0 reads per million, 8 experiments

auucaaaacucuuagcaucaaacgugauuucaggUAGGGGUGGCAAAAUGGGuuuggcucguugggccagcccguuuugcccaccuuuuuuggcgggUUGGGUUGGGAUUUUGAAu
((((((((.(((((((.((((.(.((...(((((.(((((((((((((((((((.(((((...)))))))))))))))).))))))))))))))).))))))))))))))))))))

Structure

        c       a    a g  auu     U        -           u     g 
auucaaaa ucuuagc ucaa c ug   ucagg AGGGGUGG CAAAAUGGGuu ggcuc  
|||||||| ||||||| |||| | ||   ||||| |||||||| ||||||||||| ||||| u
uAAGUUUU AGGGUUG GGUU g gc   gguuu uuuccacc guuuugcccga ccggg  
        -       -    - g  ---     -        c           -     u 

Annotation confidence Low

Genome context

Chr1: 34371229-34371344 [-]

Mature lja-miR11104-5p

• Accession: MIMAT0043805
• Description: Lotus japonicus lja-miR11104-5p mature miRNA
• Sequence: 35 - UAGGGGUGGCAAAAUGGG - 52
• Evidence: experimental ; Illumina [1]

Mature lja-miR11104-3p

• Accession: MIMAT0043806
• Description: Lotus japonicus lja-miR11104-3p mature miRNA
• Sequence: 98 - UUGGGUUGGGAUUUUGAA - 115
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256