Stem-loop lja-MIR11105b

Accession

MI0035822

Description

Lotus japonicus lja-MIR11105b precursor miRNA

Sequence

1975 reads, 265.0 reads per million, 9 experiments

gUAAGAUUGGAUACUCUCACCACaaauuaugUGUGAGGUAGACAAUGUUAUUu
((((.((((..(((.(((((.(((.....)))))))))))..)))).))))..

Structure

--    G    GA   U     C   a 
  gUAA AUUG  UAC CUCAC ACa a
  |||| ||||  ||| ||||| ||| u
  UAUU UAAC  AUG GAGUG Ugu u
uU    G    AG   -     -   a 

Annotation confidence Medium

Genome context

Chr3: 21858754-21858806 [+]

Mature lja-miR11105b-5p

• Accession: MIMAT0043808
• Description: Lotus japonicus lja-miR11105b-5p mature miRNA
• Sequence: 2 - UAAGAUUGGAUACUCUCACCAC - 23
• Evidence: experimental ; Illumina [1]

Mature lja-miR11105b-3p

• Accession: MIMAT0054661
• Description: Lotus japonicus lja-miR11105b-3p mature miRNA
• Sequence: 32 - UGUGAGGUAGACAAUGUUAUU - 52
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256