miRBase entry: lja-MIR11105c

Stem-loop lja-MIR11105c


Accession
MI0035823
Description
Lotus japonicus lja-MIR11105c precursor miRNA


Sequence

2262 reads, 285.0 reads per million, 9 experiments
ggUAAGAUUGGAUACUCUCACCACaaauugUGUGAGGUAGACAAUGUUAUUu
.((((.((((..(((.(((((.(((...)))))))))))..)))).))))..

Structure
-g    G    GA   U     C   a 
  gUAA AUUG  UAC CUCAC ACa  
  |||| ||||  ||| ||||| ||| a
  UAUU UAAC  AUG GAGUG Ugu  
uU    G    AG   -     -   u 


Annotation confidence Medium
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Genome context
Chr5: 3833721-3833772 [+]

Database links

Mature lja-miR11105c-5p

Accession MIMAT0043809
Description Lotus japonicus lja-miR11105c-5p mature miRNA
Sequence 3 - UAAGAUUGGAUACUCUCACCAC - 24
Evidence experimental
Illumina [1]

Mature lja-miR11105c-3p

Accession MIMAT0054662
Description Lotus japonicus lja-miR11105c-3p mature miRNA
Sequence 31 - UGUGAGGUAGACAAUGUUAUU - 51
Evidence experimental
unknown

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256