Stem-loop lja-MIR11105d

Accession

MI0035824

Description

Lotus japonicus lja-MIR11105d precursor miRNA

Sequence

2242 reads, 342.0 reads per million, 9 experiments

gUAAGAUUGGAUACUCUCACcauaaauugugUGUGAGGUAGACAAUGUUAUUu
((((.((((..(((.(((((((((...)))).))))))))..)))).))))..

Structure

--    G    GA   U     -    a 
  gUAA AUUG  UAC CUCAC caua  
  |||| ||||  ||| ||||| |||| a
  UAUU UAAC  AUG GAGUG gugu  
uU    G    AG   -     U    u 

Annotation confidence Medium

Genome context

Chr3: 37963922-37963974 [-]

Mature lja-miR11105d-5p

• Accession: MIMAT0043810
• Description: Lotus japonicus lja-miR11105d-5p mature miRNA
• Sequence: 2 - UAAGAUUGGAUACUCUCAC - 20
• Evidence: experimental ; Illumina [1]

Mature lja-miR11105d-3p

• Accession: MIMAT0054663
• Description: Lotus japonicus lja-miR11105d-3p mature miRNA
• Sequence: 32 - UGUGAGGUAGACAAUGUUAUU - 52
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256