Stem-loop lja-MIR11107b

Accession

MI0035827

Description

Lotus japonicus lja-MIR11107b precursor miRNA

Sequence

18841 reads, 1739.0 reads per million, 9 experiments

auuuggucaaauaauACACUGAACUAACCACCUAAAuacacaugacuaaccauaaaacacauaaccguguaaacucaguugaaauuccuaaauucaauuuuacacgguuuugugcuuuaugguuagucauguguaUUUAGGUGGUUAGUUCAGUGUauuauuuggccaaau
((((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((.(((((((((((....((((((.........))))))))))))))))).)))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                        a    u           cuca      auu 
auuuggucaaauaauACACUGAACUAACCACCUAAAuacacaugacuaaccauaaa caca aaccguguaaa    guugaa   c
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||    ||||||   c
uaaaccgguuuauuaUGUGACUUGAUUGGUGGAUUUauguguacugauugguauuu gugu uuggcacauuu    uaacuu   u
                                                        c    u           ----      aaa 

Annotation confidence Medium

Genome context

Chr3: 10224233-10224403 [+]

Mature lja-miR11107b-5p

• Accession: MIMAT0054664
• Description: Lotus japonicus lja-miR11107b-5p mature miRNA
• Sequence: 16 - ACACUGAACUAACCACCUAAA - 36
• Evidence: experimental ; unknown

Mature lja-miR11107b-3p

• Accession: MIMAT0043815
• Description: Lotus japonicus lja-miR11107b-3p mature miRNA
• Sequence: 136 - UUUAGGUGGUUAGUUCAGUGU - 156
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256