Stem-loop lja-MIR11107c

Accession

MI0035828

Description

Lotus japonicus lja-MIR11107c precursor miRNA

Sequence

22261 reads, 1923.0 reads per million, 9 experiments

gaUUUGGCCAAAUAAUACACUGAACUaaccaccuaaauacacgugacuaaccaccuaaauaaugguuagucauguguaUUUAGGUGGUUAGUUCAGUGUauuauuuggccaaauc
(((((((((((((((((((((((((((((((((((((((((((((((((((((.........)))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                     ccu 
gaUUUGGCCAAAUAAUACACUGAACUaaccaccuaaauacacgugacuaacca   a
|||||||||||||||||||||||||||||||||||||||||||||||||||||   a
cuaaaccgguuuauuaUGUGACUUGAUUGGUGGAUUUauguguacugauuggu   a
                                                     aau 

Annotation confidence Low

Genome context

Chr4: 2038178-2038292 [+]

Mature lja-miR11107c-5p

• Accession: MIMAT0043816
• Description: Lotus japonicus lja-miR11107c-5p mature miRNA
• Sequence: 3 - UUUGGCCAAAUAAUACACUGAACU - 26
• Evidence: experimental ; Illumina [1]

Mature lja-miR11107c-3p

• Accession: MIMAT0043817
• Description: Lotus japonicus lja-miR11107c-3p mature miRNA
• Sequence: 79 - UUUAGGUGGUUAGUUCAGUGU - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256