Stem-loop lja-MIR7526l

Accession

MI0035829

Description

Lotus japonicus lja-MIR7526l precursor miRNA

Sequence

1232 reads, 114.0 reads per million, 9 experiments

aacuuccgcuauuuuaguagcgguaacuuccgcuaucuuaguagcgguaacuaccgcuaucuugAUUGCGGAAGGUUUUGAAUUUAACagacgucgauuuccuucuaaugcucacguuuguuguauccgcuaucuugauagcgguaauuaccgcUAUCUUGAUAGCGGAAGUUACagcuaucaagauagcggaaguu
(((((((((((((((.(((((.(((((((((((((((...((((((((((.((((((((((..(((.(((((............((((((((((.((..............))))))))))))..))))).)))..)))))))))).))))))))))...))))))))))))))).))))).)))))))))))))))

Structure

               a     g               uua          c          uu   U     AGGUUUUGAAUU          c  uuuccu 
aacuuccgcuauuuu guagc guaacuuccgcuauc   guagcgguaa uaccgcuauc  gAU GCGGA            UAACagacgu ga      u
||||||||||||||| ||||| |||||||||||||||   |||||||||| ||||||||||  ||| |||||            |||||||||| ||       
uugaaggcgauagaa uaucg CAUUGAAGGCGAUAG   UAUcgccauu auggcgauag  cua cgccu            guuguuugca cu      c
               c     a               UUC          a          uu   u     ----------au          -  cguaau 

Annotation confidence Low

Genome context

Chr3: 38554726-38554922 [+]

Mature lja-miR7526l-5p

• Accession: MIMAT0043818
• Description: Lotus japonicus lja-miR7526l-5p mature miRNA
• Sequence: 65 - AUUGCGGAAGGUUUUGAAUUUAAC - 88
• Evidence: experimental ; Illumina [1]

Mature lja-miR7526l-3p

• Accession: MIMAT0043819
• Description: Lotus japonicus lja-miR7526l-3p mature miRNA
• Sequence: 155 - UAUCUUGAUAGCGGAAGUUAC - 175
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256