Stem-loop lja-MIR11082l

Accession

MI0035830

Description

Lotus japonicus lja-MIR11082l precursor miRNA

Sequence

3757 reads, 406.0 reads per million, 9 experiments

gccgAUAGCUUUUUGUGUGAUUUCUCUacggaaauCACAGAGAGUUGGUUGGACU
.((((((((((((..((((((((((....))))))))))))))))).)))))...

Structure

--g     -       UG          C 
   ccgAU AGCUUUU  UGUGAUUUCU U
   ||||| |||||||  ||||||||||  
   GGUUG UUGAGAG  ACACuaaagg a
UCA     G       --          c 

Annotation confidence Low

Genome context

Chr0: 20895315-20895369 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR11082l

Mature lja-miR11082l-5p

• Accession: MIMAT0054665
• Description: Lotus japonicus lja-miR11082l-5p mature miRNA
• Sequence: 5 - AUAGCUUUUUGUGUGAUUUCUCU - 27
• Evidence: experimental ; unknown

Mature lja-miR11082l-3p

• Accession: MIMAT0043820
• Description: Lotus japonicus lja-miR11082l-3p mature miRNA
• Sequence: 36 - CACAGAGAGUUGGUUGGACU - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256