Stem-loop lja-MIR11108a

Accession

MI0035831

Description

Lotus japonicus lja-MIR11108a precursor miRNA

Sequence

17688 reads, 1948.0 reads per million, 9 experiments

gggguugucuaaaugacccaugauaaaguuuggguuaAAUAACCCAUCAUCCAAUCACAuuggagauaaaugaguuugaaauaaauuaauaaauaaaaaauagaaauuccAACUCAUUUAUCUCCAAUGUGAUUggaugauggguuauuuaacccaaacuuuaucaugggucauuuagacaacccc
((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((..........................))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))

Structure

                                                                            u   auaaauuaauaa 
gggguugucuaaaugacccaugauaaaguuuggguuaAAUAACCCAUCAUCCAAUCACAuuggagauaaaugaguu gaa            a
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||             
ccccaacagauuuacuggguacuauuucaaacccaauuuauuggguaguaggUUAGUGUAACCUCUAUUUACUCAA cuu            u
                                                                            c   aaagauaaaaaa 

Annotation confidence Low

Genome context

Chr2: 38672356-38672541 [+]

Mature lja-miR11108a-5p

• Accession: MIMAT0043821
• Description: Lotus japonicus lja-miR11108a-5p mature miRNA
• Sequence: 38 - AAUAACCCAUCAUCCAAUCACA - 59
• Evidence: experimental ; Illumina [1]

Mature lja-miR11108a-3p

• Accession: MIMAT0043822
• Description: Lotus japonicus lja-miR11108a-3p mature miRNA
• Sequence: 111 - AACUCAUUUAUCUCCAAUGUGAUU - 134
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256