Stem-loop lja-MIR11108b

Accession

MI0035832

Description

Lotus japonicus lja-MIR11108b precursor miRNA

Sequence

4543 reads, 628.0 reads per million, 9 experiments

gggauugucuaaaugaccuAUGAUAAAGUUUGGGUUAAAUAACccaucaucuaaucacauuagagauaagugaguugaaauuucuauauuuuauuuauuaauuuauuuccaauugacuuaucuccaaugugauugaaugauggguuauuuaacucaaacuUUAUCAUGGGUCAUUUAGACAACCc
(((.((((((((((((((((((((((((((((((((((((((((((((((.((((((((((.(((((((((.(((((((((....(((.......)))......)))).))))).))))))))).)))))))))).)))))))))))))))))))))))))))))))))))))))))))))))))

Structure

   a                                              c          a         g     -    --uucu   uu 
ggg uugucuaaaugaccuAUGAUAAAGUUUGGGUUAAAUAACccaucau uaaucacauu gagauaagu aguug aaau      aua  u
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||| ||||      |||  u
cCC AACAGAUUUACUGGGUACUAUUucaaacucaauuuauuggguagua guuaguguaa cucuauuca uuaac uuua      uau  a
   -                                              a          c         g     c    uuuaau   uu 

Annotation confidence Low

Genome context

Chr3: 28128395-28128579 [+]

Mature lja-miR11108b-5p

• Accession: MIMAT0054666
• Description: Lotus japonicus lja-miR11108b-5p mature miRNA
• Sequence: 20 - AUGAUAAAGUUUGGGUUAAAUAAC - 43
• Evidence: experimental ; unknown

Mature lja-miR11108b-3p

• Accession: MIMAT0043823
• Description: Lotus japonicus lja-miR11108b-3p mature miRNA
• Sequence: 161 - UUAUCAUGGGUCAUUUAGACAACC - 184
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256