Stem-loop lja-MIR11110b

Accession

MI0035835

Description

Lotus japonicus lja-MIR11110b precursor miRNA

Sequence

gaacuacuuuaggUCUUUAUGUCUUUGAAUGAGGguaaaaaacuuucccccuucaauucgguucgauauaccCUCAUUCAAAGACAUAAAAUCugagggagauuc
(((((.((((((((.((((((((((((((((((((((...((((...............)))).....)))))))))))))))))))))))))))))).)).)))

Structure

   -  a        C                      --aaa    uucccc 
gaa cu cuuuaggU UUUAUGUCUUUGAAUGAGGgua     aacu      c
||| || |||||||| ||||||||||||||||||||||     ||||      u
cuu ga ggaguCUA AAAUACAGAAACUUACUCccau     uugg      u
   a  g        -                      auagc    cuuaac 

Annotation confidence Low

Genome context

Chr2: 10289465-10289569 [+]

Mature lja-miR11110b-5p

• Accession: MIMAT0043826
• Description: Lotus japonicus lja-miR11110b-5p mature miRNA
• Sequence: 14 - UCUUUAUGUCUUUGAAUGAGG - 34
• Evidence: experimental ; Illumina [1]

Mature lja-miR11110b-3p

• Accession: MIMAT0043827
• Description: Lotus japonicus lja-miR11110b-3p mature miRNA
• Sequence: 73 - CUCAUUCAAAGACAUAAAAUC - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256