Stem-loop lja-MIR11111

Accession

MI0035837

Description

Lotus japonicus lja-MIR11111 precursor miRNA

Sequence

3144 reads, 484.0 reads per million, 9 experiments

accaaguagagccggGAUCCUCUCAAGUGUAAAAAAACUugagaauguuaaguuuuaccauuucaccauuaacuuuuguguagauaaugaaugaaaaauaagauaaaauaaaaUUAAUGGUGAGAUGAUGAAACuugacacucucaaguuuuuuuacacaugagaggauccaaaccaaacuuggu
(((((((.......(((((((((((.((((((((((((((((((.((((((((((((.((((((((((((((.((((((............................)))))))))))))))))))).)))))))))))).)))))))))))))))))).))))))))))).......)))))))

Structure

       agagccg           A                  a            c              c      guagauaaugaau 
accaagu       gGAUCCUCUCA GUGUAAAAAAACUugaga uguuaaguuuua cauuucaccauuaa uuuugu             g
|||||||       ||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||||              
ugguuca       ccuaggagagu cacauuuuuuugaacucu acaguuCAAAGU GUAGAGUGGUAAUU aaaaua             a
       aaccaaa           a                  c            A              -      aaauagaauaaaa 

Annotation confidence Low

Genome context

Chr2: 26398948-26399132 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR11111

Mature lja-miR11111-5p

• Accession: MIMAT0054667
• Description: Lotus japonicus lja-miR11111-5p mature miRNA
• Sequence: 16 - GAUCCUCUCAAGUGUAAAAAAACU - 39
• Evidence: experimental ; unknown

Mature lja-miR11111-3p

• Accession: MIMAT0043830
• Description: Lotus japonicus lja-miR11111-3p mature miRNA
• Sequence: 114 - UUAAUGGUGAGAUGAUGAAAC - 134
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256