Stem-loop lja-MIR11112

Accession

MI0035838

Description

Lotus japonicus lja-MIR11112 precursor miRNA

Sequence

2536 reads, 398.0 reads per million, 9 experiments

ccucucaagugUAAAAAAACUUGAGAGUGUuaacuuuuacuaucucgccauuaauuuuuguguagauaauaaaugaaaaauaaaauaaaaUUAAUGGUGAGAUGAUGAAACuugacacucucaauuuuuuuuacacgagg
((((....(((((((((((.(((((((((((((.(((((.((((((((((((((((((............................)))))))))))))))))).))))).))))))))))))).)))))))))))))))

Structure

    ucaa           C             c     c                  uguguagauaaua 
ccuc    gugUAAAAAAA UUGAGAGUGUuaa uuuua uaucucgccauuaauuuu             a
||||    ||||||||||| ||||||||||||| ||||| ||||||||||||||||||              
ggag    cacauuuuuuu aacucucacaguu AAAGU GUAGAGUGGUAAUUaaaa             a
    ----           u             C     A                  uaaaauaaaaagu 

Annotation confidence Low

Genome context

Chr3: 7982687-7982826 [+]

Mature lja-miR11112-5p

• Accession: MIMAT0054668
• Description: Lotus japonicus lja-miR11112-5p mature miRNA
• Sequence: 12 - UAAAAAAACUUGAGAGUGU - 30
• Evidence: experimental ; unknown

Mature lja-miR11112-3p

• Accession: MIMAT0043831
• Description: Lotus japonicus lja-miR11112-3p mature miRNA
• Sequence: 91 - UUAAUGGUGAGAUGAUGAAAC - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256