Stem-loop lja-MIR11097e

Accession

MI0035839

Description

Lotus japonicus lja-MIR11097e precursor miRNA

Sequence

6579 reads, 984.0 reads per million, 9 experiments

ugaguUUAAUGGAUAUGCACUGUCAGUGUaaaacuguuuuacacugacaaccaaucacaacaugccauauaagugaaauaauaucuuucaucuuaaauuuuaauuaaaacaagaauauauuugcugauguggcggaauucaaUUGGGCGACUGUGUAAACAAAGUUuacacugacaguguauacccauuaaauucuua
.(((((((((((.(((((((((((((((((((.((..(((((((......(((((.......((((((((.(((.(((((...((((.......................))))...)))))))).)))))))).......)))))......)))))))...))))))))))))))))))))).)))))))))))...

Structure

--u           A                   a  -gu       ugacaa     cacaaca        a   g     aua    ucaucuuaaa 
   gaguUUAAUGG UAUGCACUGUCAGUGUaaa cu   uuuacac      ccaau       ugccauau agu aaaua   ucuu          u
   ||||||||||| ||||||||||||||||||| ||   |||||||      |||||       |||||||| ||| |||||   ||||          u
   cuuaaauuacc auaugugacagucacauUU GA   AAAUGUG      GGUUa       gcggugua ucg uuuau   agaa          u
auu           c                   -  AAC       UCAGCG     acuuaag        g   -     aua    caaaauuaau 

Annotation confidence Low

Genome context

Chr2: 21960538-21960735 [-]

Mature lja-miR11097e-5p

• Accession: MIMAT0043832
• Description: Lotus japonicus lja-miR11097e-5p mature miRNA
• Sequence: 6 - UUAAUGGAUAUGCACUGUCAGUGU - 29
• Evidence: experimental ; Illumina [1]

Mature lja-miR11097e-3p

• Accession: MIMAT0054669
• Description: Lotus japonicus lja-miR11097e-3p mature miRNA
• Sequence: 143 - UUGGGCGACUGUGUAAACAAAGUU - 166
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256