Stem-loop lja-MIR11078f

Accession

MI0035841

Description

Lotus japonicus lja-MIR11078f precursor miRNA

Sequence

6904 reads, 597.0 reads per million, 9 experiments

aauuaccgucaaccaaucauaaUUUAAGGAUGUGAGAAAAUcacuuuuuuuauuuaauuucauuaauugaugugacacauccuuaaaauaugAUUGGUUGACGGUGUAAAAA
...((((((((((((((((((.((((((((((((......((((.((..(((...........)))..)).)))))))))))))))).))))))))))))))))))......

Structure

---aau                  a            AGAAAA    u  uu   uuua 
      uaccgucaaccaaucaua UUUAAGGAUGUG      Ucac uu  uua    a
      |||||||||||||||||| ||||||||||||      |||| ||  |||    u
      GUGGCAGUUGGUUAguau aaauuccuacac      agug ag  aau    u
AAAAAU                  a            ------    u  uu   uacu 

Annotation confidence Low

Genome context

Chr3: 45918574-45918685 [+]

Mature lja-miR11078f-5p

• Accession: MIMAT0054670
• Description: Lotus japonicus lja-miR11078f-5p mature miRNA
• Sequence: 23 - UUUAAGGAUGUGAGAAAAU - 41
• Evidence: experimental ; unknown

Mature lja-miR11078f-3p

• Accession: MIMAT0043835
• Description: Lotus japonicus lja-miR11078f-3p mature miRNA
• Sequence: 93 - AUUGGUUGACGGUGUAAAAA - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256