Stem-loop lja-MIR11114

Accession

MI0035842

Description

Lotus japonicus lja-MIR11114 precursor miRNA

Sequence

7972 reads, 797.0 reads per million, 9 experiments

uguuccUAUAUAUCUGUCCACUUAGAGUuucaagagagcauuaauuuauguuuuuccaagaaaugccuuuccagaaccaauaaaugaagaaagauaaaaucccuucuaaaggguuauauaggaaaacauuuaugaaaaucaacacaauuaauugcUUUCCUUAAUUUGUGUGAACCUUCucuuccuggacagauaaauaggaacgg
(((((((((.((((((((((...((((.((((.(((((((((((((..((.(((((....(((((..(((((..((((.......((((...(((...))).)))).....)))).....))))).)))))..))))).))....)))))).)))))))...........))))....))))...)))))))))).))))))))).

Structure

-         A          CUU    ---U    ----------a       -      --ua  u     caag     cc     ---ag    aauaaau    aaa   a 
 uguuccUAU UAUCUGUCCA   AGAG    uuca           gagagca uuaauu    ug uuuuc    aaaug  uuucc     aacc       gaag   gau  
 ||||||||| ||||||||||   ||||    ||||           ||||||| ||||||    || |||||    |||||  |||||     ||||       ||||   ||| a
 gcaaggaua auagacaggu   ucuC    AAGU           CUUUcgu aauuaa    ac aaaag    uuuac  aaagg     uugg       cuuc   cua  
g         a          ccu    UUCC    GUGUUUAAUUC       u      caca  u     --ua     -a     auaua    --gaaau    --c   a 

Annotation confidence Low

Genome context

Chr2: 44189015-44189220 [+]

Mature lja-miR11114-5p

• Accession: MIMAT0043836
• Description: Lotus japonicus lja-miR11114-5p mature miRNA
• Sequence: 7 - UAUAUAUCUGUCCACUUAGAGU - 28
• Evidence: experimental ; Illumina [1]

Mature lja-miR11114-3p

• Accession: MIMAT0043837
• Description: Lotus japonicus lja-miR11114-3p mature miRNA
• Sequence: 156 - UUUCCUUAAUUUGUGUGAACCUUC - 179
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256