Stem-loop lja-MIR11108j

Accession

MI0035843

Description

Lotus japonicus lja-MIR11108j precursor miRNA

Sequence

5019 reads, 884.0 reads per million, 9 experiments

uaaaugacucaugugaaaguuuggguuaaauaacucauuauccaaucacauuggagauaagUGAGUUGGAAAUAAAUUAAUAAAUaaaauauaaaaauuucaacucaccuaucuuuaauauaAUUGGAUGAUGAGUUAUUUAACCaaaacuuucacaugagucauuua
((((((((((((((((((((((.(((((((((((((((((((((((...((((((((((.(((((((((((..........................))))))))))).))))))))))...))))))))))))))))))))))).))))))))))))))))))))))

Structure

                      g                       cac          a           AUAAAUUAAUAA 
uaaaugacucaugugaaaguuu gguuaaauaacucauuauccaau   auuggagaua gUGAGUUGGAA            A
|||||||||||||||||||||| |||||||||||||||||||||||   |||||||||| |||||||||||             
auuuacugaguacacuuucaaa CCAAUUUAUUGAGUAGUAGGUUA   uaauuucuau cacucaacuuu            U
                      a                       aua          c           aaaaauauaaaa 

Annotation confidence Low

Genome context

Chr1: 53955665-53955832 [+]

Mature lja-miR11108j-5p

• Accession: MIMAT0043838
• Description: Lotus japonicus lja-miR11108j-5p mature miRNA
• Sequence: 62 - UGAGUUGGAAAUAAAUUAAUAAAU - 85
• Evidence: experimental ; Illumina [1]

Mature lja-miR11108j-3p

• Accession: MIMAT0043839
• Description: Lotus japonicus lja-miR11108j-3p mature miRNA
• Sequence: 123 - AUUGGAUGAUGAGUUAUUUAACC - 145
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256