Stem-loop lja-MIR11115

Accession

MI0035844

Description

Lotus japonicus lja-MIR11115 precursor miRNA

Sequence

655 reads, 122.0 reads per million, 9 experiments

uaugcacuccgaaggaggauggUGGUAUGUAACUUAGAAGUUUcaaacaaaggucuauaauuugggcacuaugagagucucuacccuuguuugaaaCUUCUAUGUUACAUACCACCAuccuccuucggagugaaua
....(((((((((((((((((((((((((((((.((((((((((((((((.(((......(((.(......).)))......))).)))))))))))))))).)))))))))))))))))))))))))))))....

Structure

uaug                             U                a   cuauaa   g gc 
    cacuccgaaggaggauggUGGUAUGUAAC UAGAAGUUUcaaacaa ggu      uuu g  a
    ||||||||||||||||||||||||||||| |||||||||||||||| |||      ||| |   
    gugaggcuuccuccuACCACCAUACAUUG AUCUUCaaaguuuguu cca      aga u  c
auaa                             U                c   ucucug   g au 

Annotation confidence Medium

Genome context

Chr4: 3791878-3792013 [+]

Mature lja-miR11115-5p

• Accession: MIMAT0043840
• Description: Lotus japonicus lja-miR11115-5p mature miRNA
• Sequence: 23 - UGGUAUGUAACUUAGAAGUUU - 43
• Evidence: experimental ; Illumina [1]

Mature lja-miR11115-3p

• Accession: MIMAT0054671
• Description: Lotus japonicus lja-miR11115-3p mature miRNA
• Sequence: 97 - CUUCUAUGUUACAUACCACCA - 117
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256