Stem-loop lja-MIR11072j

Accession

MI0035845

Description

Lotus japonicus lja-MIR11072j precursor miRNA

Sequence

23943 reads, 1925.0 reads per million, 9 experiments

ggguuaauccucuaaUUGGUCCCUGUGGUUGUGUggccgucugaaauuannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncggccACACAACCACAGGGACCAAuuagaggauuauccc
(((.(((((((((((((((((((((((((((((((((((..............................................................................................................))))))))))))))))))))))))))))))))))).)))

Structure

   u                                   ucugaaauuannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn 
ggg uaauccucuaaUUGGUCCCUGUGGUUGUGUggccg                                                      n
||| |||||||||||||||||||||||||||||||||||                                                       
ccc auuaggagauuAACCAGGGACACCAACACAccggc                                                      n
   u                                   nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn 

Annotation confidence Medium

Genome context

Unknown

Mature lja-miR11072j-5p

• Accession: MIMAT0043841
• Description: Lotus japonicus lja-miR11072j-5p mature miRNA
• Sequence: 16 - UUGGUCCCUGUGGUUGUGU - 34
• Evidence: experimental ; Illumina [1]

Mature lja-miR11072j-3p

• Accession: MIMAT0043842
• Description: Lotus japonicus lja-miR11072j-3p mature miRNA
• Sequence: 155 - ACACAACCACAGGGACCAA - 173
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256