Stem-loop lja-MIR11116

Accession

MI0035846

Description

Lotus japonicus lja-MIR11116 precursor miRNA

Sequence

3193 reads, 311.0 reads per million, 9 experiments

ugaagagcauugauguguacacccuccgguuacauauauaaggaaaaaacacuuuuuagguucauucAUUUAAUGAAUGUAUCUAGUuguuuuaaugacuagauacauucaacuagauacauucauuaaaugaaagaaccuaaaaaauguuuuuugcUUAUAUAUGUGACCGGAGGguguaugccauauuuuacucugcca
...((((....(((((((((((((((((((((((((((((((.((((((((.(((((((((((.(((((((((((((((((((((((((....((((........))))))))))))))))))))))))))))).))))))))))).)))))))).)))))))))))))))))))))))))...))))))...))))....

Structure

-uga    cauu      ---                         g        c           a                         uuuu    acu 
    agag    gaugug   uacacccuccgguuacauauauaag aaaaaaca uuuuuagguuc uucAUUUAAUGAAUGUAUCUAGUug    aaug   a
    ||||    ||||||   ||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||    ||||    
    ucuc    uuauac   augugGGAGGCCAGUGUAUAUAUUc uuuuuugu aaaaauccaag aaguaaauuacuuacauagaucaac    uuac   g
accg    -auu      cgu                         g        a           a                         ----    aua 

Annotation confidence Low

Genome context

Chr1: 9479391-9479591 [+]

Mature lja-miR11116-5p

• Accession: MIMAT0054672
• Description: Lotus japonicus lja-miR11116-5p mature miRNA
• Sequence: 68 - AUUUAAUGAAUGUAUCUAGU - 87
• Evidence: experimental ; unknown

Mature lja-miR11116-3p

• Accession: MIMAT0043843
• Description: Lotus japonicus lja-miR11116-3p mature miRNA
• Sequence: 158 - UUAUAUAUGUGACCGGAGG - 176
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256