Stem-loop lja-MIR11097i

Accession

MI0035847

Description

Lotus japonicus lja-MIR11097i precursor miRNA

Sequence

aaacuuuacaccgucgugcauagaaauuaaacucuuaaaucauucccauuaaauauuauuaauaagaguUUAAUGGAUAUGCACUGACAGuauaaaauaguuu
....((((.((.((((((((((...((((((((((((.........................))))))))))))...))))))).))).)).)))).......

Structure

---aaac    c  c   -       gaa            aaucauuccca 
       uuua ac guc gugcaua   auuaaacucuua           u
       |||| || ||| |||||||   ||||||||||||           u
       aaau uG CAG CACGUAU   UAAUUugagaau           a
uuugaua    a  A   U       AGG            aauuauuauaa 

Annotation confidence Not enough data

Genome context

Chr1: 41736703-41736805 [+]

Mature lja-miR11097i-3p

• Accession: MIMAT0043844
• Description: Lotus japonicus lja-miR11097i-3p mature miRNA
• Sequence: 70 - UUAAUGGAUAUGCACUGACAG - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256