Stem-loop lja-MIR11097g

Accession

MI0035848

Description

Lotus japonicus lja-MIR11097g precursor miRNA

Sequence

44090 reads, 5634.0 reads per million, 9 experiments

ugaguUUAAUGGAUAUGCACUGACAGUGUaaaauaguuuuacacagacauccaauugaauuccgucaaaucagaaaauauauuauucuuuuaauuaaaauuaaagucaaauguaauuaucucuccuauguggcaugcuUUGAUUGGAUGACUGUGUAAAACUauuuuacauuagugcauauccauuaaacuc
.(((((((((((((((((((((...(((((((((((((((((((((.((((((((((((....((((....(((.((((((((....(((((((....)))))))...))))).))).)))........))))....)))))))))))).))))))))))))))))))))))))))))))))))))))))))

Structure

u                     ACA                     a            uucc    ----aauc   a   -     auuc       u 
 gaguUUAAUGGAUAUGCACUG   GUGUaaaauaguuuuacacag cauccaauugaa    guca        aga aau auauu    uuuuaau a
 |||||||||||||||||||||   ||||||||||||||||||||| ||||||||||||    ||||        ||| ||| |||||    |||||||  
 cucaaauuaccuauacgugau   uacauuuuaUCAAAAUGUGUC GUAGGUUAGUUu    cggu        ucu uua uguaa    gaaauua a
-                     ---                     A            cgua    guauccuc   a   a     -acu       a 

Annotation confidence Low

Genome context

Chr3: 34405691-34405882 [+]

Mature lja-miR11097g-5p

• Accession: MIMAT0043845
• Description: Lotus japonicus lja-miR11097g-5p mature miRNA
• Sequence: 6 - UUAAUGGAUAUGCACUGACAGUGU - 29
• Evidence: experimental ; Illumina [1]

Mature lja-miR11097g-3p

• Accession: MIMAT0054673
• Description: Lotus japonicus lja-miR11097g-3p mature miRNA
• Sequence: 139 - UUGAUUGGAUGACUGUGUAAAACU - 162
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256