Stem-loop lja-MIR11097h

Accession

MI0035849

Description

Lotus japonicus lja-MIR11097h precursor miRNA

Sequence

17136 reads, 2004.0 reads per million, 9 experiments

agaguUUAAUGGAUAUGCACUGACAGUGUaaaauaguuuuacacagacauccaauugaauuccgccaaaucagaaaauaucuuauucuuuuaauuaaaauuaaagucaaauguaauuaucucuccunAUGUGGCAUGCUUUGAUUGGAUGAauguguaaaacuauuuuacacugucagugcauuauccauuaaau
...((((((((((((((((((((((((((((((((((((((((((..((((((((((((....((((....(((........((((.(((((((....)))))))...))))........))).......))))....))))))))))))..)))))))))))))))))))))))))))))).))))))))))))

Structure

aga            -                              ga            uucc    ---aauc   aaauaucu    --c       u 
   guUUAAUGGAUA UGCACUGACAGUGUaaaauaguuuuacaca  cauccaauugaa    gcca       aga        uauu   uuuuaau a
   |||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||    ||||       |||        ||||   |||||||  
   uaaauuaccuau acgugacugucacauuuuaucaaaaugugu  GUAGGUUAGUUU    CGGU       ucu        guaa   gaaauua a
---            u                              aA            CGUA    GUAnucc   cuauuaau    acu       a 

Annotation confidence Low

Genome context

Unknown

Mature lja-miR11097h-5p

• Accession: MIMAT0043846
• Description: Lotus japonicus lja-miR11097h-5p mature miRNA
• Sequence: 6 - UUAAUGGAUAUGCACUGACAGUGU - 29
• Evidence: experimental ; Illumina [1]

Mature lja-miR11097h-3p

• Accession: MIMAT0054674
• Description: Lotus japonicus lja-miR11097h-3p mature miRNA
• Sequence: 128 - AUGUGGCAUGCUUUGAUUGGAUGA - 151
• Evidence: experimental ; unknown

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256