Stem-loop lja-MIR11117a

Accession

MI0035850

Description

Lotus japonicus lja-MIR11117a precursor miRNA

Sequence

ccacuuucaccuUCUUCCUCUUCCUCCAUAACUcaaaucacauaaauucaaaaggaagaacaaggugaaugugauaaacauauaguuuuuuuuaggguuuugaauuucuagguuuaaggauuugagUUAUGGAGGAAGAGGAAGAAGauggaagagg
((.((((((.(((((((((((((((((((((((((((((((..((((((((((..(((((.(((.((.((((.....)))).)).))))))))....))))))))))....)).....))))))))))))))))))))))))))))).)))))).))

Structure

  a      c                             -----  --au          --gg     c   g  a    g 
cc cuuuca cuUCUUCCUCUUCCUCCAUAACUcaaauc     ac    aaauucaaaa    aagaa aag ug augu a
|| |||||| |||||||||||||||||||||||||||||     ||    ||||||||||    ||||| ||| || |||| u
gg gaaggu GAAGAAGGAGAAGGAGGUAUUgaguuuag     ug    uuuaaguuuu    uuuuu uuu au uaca a
  a      a                             gaauu  gauc          ggga     -   g  a    a 

Annotation confidence Not enough data

Genome context

Chr1: 57698554-57698710 [+]

Mature lja-miR11117a-5p

• Accession: MIMAT0043847
• Description: Lotus japonicus lja-miR11117a-5p mature miRNA
• Sequence: 13 - UCUUCCUCUUCCUCCAUAACU - 33
• Evidence: experimental ; Illumina [1]

Mature lja-miR11117a-3p

• Accession: MIMAT0043848
• Description: Lotus japonicus lja-miR11117a-3p mature miRNA
• Sequence: 127 - UUAUGGAGGAAGAGGAAGAAG - 147
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256