Stem-loop lja-MIR11117b

Accession

MI0035851

Description

Lotus japonicus lja-MIR11117b precursor miRNA

Sequence

483 reads, 53.0 reads per million, 8 experiments

cuuucaccuucuaccucuuucucuauaacccaaaucacauaaaUUCAAAAGGAAGAACAAGGUGAAUgugauaaacauauagauuuuuuuaggauuuugaauuucuagguuuaaggauuugaaUUAUGGAGGAAGAGGAAGAAGguggaag
((((((((((((.(((((((((((((((..((((((((..((((((((((....(((.(((((..(((((.....)))))..))))))))....))))))))))....)).....))))))..))))))))))))))).))))))))))))

Structure

            a               cc      -----  --au          GGAA   C     GA     a 
cuuucaccuucu ccucuuucucuauaa  caaauc     ac    aaaUUCAAAA    GAA AAGGU  AUgug u
|||||||||||| |||||||||||||||  ||||||     ||    ||||||||||    ||| |||||  ||||| a
gaaggugGAAGA GGAGAAGGAGGUAUU  guuuag     ug    uuuaaguuuu    uuu uuuua  uauac a
            A               aa      gaauu  gauc          agga   -     ga     a 

Annotation confidence Low

Genome context

Chr2: 9554716-9554866 [+]

Mature lja-miR11117b-5p

• Accession: MIMAT0054675
• Description: Lotus japonicus lja-miR11117b-5p mature miRNA
• Sequence: 44 - UUCAAAAGGAAGAACAAGGUGAAU - 67
• Evidence: experimental ; unknown

Mature lja-miR11117b-3p

• Accession: MIMAT0043849
• Description: Lotus japonicus lja-miR11117b-3p mature miRNA
• Sequence: 124 - UUAUGGAGGAAGAGGAAGAAG - 144
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256